Professor Pržulj’s research has been supported by over €27 million in competitive research funding. Notably, she received three prestigious, single PI, European Research Council (ERC) grants: ERC Consolidator (2018-2025), ERC Proof of Concept (2020-2023) and ERC Starting (2012-2017). She also received an NSF Career award at UC Irvine, California, USA (2007-2011), among other funded research projects. She has been elected to many academies and learned societies, including:
- Fellow of the Asia-Pacific Artificial Intelligence Association (AAIA), since 2025
- Fellow of the International Society for Computational Biology (ISCB), in 2024
- Fellow of The European Laboratory for Learning and Intelligent Systems (ELLIS), in 2024
- Fellow of the British Computer Society (BCS) Academy of Computing, in 2013
- Member of Academia Europaea, The Academy of Europe, in 2017
- Member of the Serbian Royal Academy of Scientists and Artists (SKANU), in 2019
- Scientific Advisor of the Mathematics Institute of the Serbian Academy of Sciences and Arts (SANU), in 2012
In 2014, Professor Pržulj received the British Computer Society Roger Needham Award, sponsored by Microsoft Research, in recognition of the potential her research has to revolutionize health and pharmaceutics.