Zuqi Li, Sam F L Windels, Noël Malod-Dognin, Seth M Weinberg, Mary L Marazita, Susan Walsh, Mark D Shriver, David W Fardo, Peter Claes, Nataša Pržulj, Kristel Van Steen, Clustering individuals using INMTD: a novel versatile multi-view embedding framework integrating omics and imaging data, Bioinformatics, Volume 41, Issue 4, April 2025, btaf122, https://doi.org/10.1093/bioinformatics/btaf122
Mihai Pop, Teresa K Attwood, Judith A Blake, Philip E Bourne, Ana Conesa, Terry Gaasterland, Lawrence Hunter, Carl Kingsford, Oliver Kohlbacher, Thomas Lengauer, Scott Markel, Yves Moreau, William S Noble, Christine Orengo, B F Francis Ouellette, Laxmi Parida, Natasa Przulj, Teresa M Przytycka, Shoba Ranganathan, Russell Schwartz, Alfonso Valencia, Tandy Warnow, Biological databases in the age of generative artificial intelligence, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf044, https://doi.org/10.1093/bioadv/vbaf044
Nataša Pržulj, Noël Malod-Dognin, Simplicity within biological complexity, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbae164, https://doi.org/10.1093/bioadv/vbae164
Sam F L Windels, Daniel Tello Velasco, Mikhail Rotkevich, Noël Malod-Dognin, Nataša Pržulj, Graphlet-based hyperbolic embeddings capture evolutionary dynamics in genetic networks, Bioinformatics, Volume 40, Issue 11, November 2024, btae650, https://doi.org/10.1093/bioinformatics/btae650
Katarina Mihajlović, Noël Malod-Dognin, Corrado Ameli, Alexander Skupin, Nataša Pržulj, MONFIT: multi-omics factorization-based integration of time-series data sheds light on Parkinson’s disease, NAR Molecular Medicine, Volume 1, Issue 4, October 2024, ugae012, https://doi.org/10.1093/narmme/ugae012
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Bader, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga Zolotareva, Jan Baumbach, Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing, Nucleic Acids Research, Volume 52, Issue W1, 5 July 2024, Pages W481–W488, https://doi.org/10.1093/nar/gkae388
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